Jason Bret Harris, PhD

Computational Chemist/Biologist

PEER-REVIEWED JOURNAL PUBLICATIONS

  • Wilfredo Evangelista, Rebecca L. Weir, Sally R. Ellingson, Jason B. Harris, Karan Kapoor, Jeremy C. Smith, Jerome Baudry. Ensemble-based docking: From hit discovery to metabolism and toxicity predictions. Bioorganic & Medicinal Chemistry. (July 2016); 24(20):4928–4935

  • Jason B. Harris and Valerie Berthelier, Kasey Estenson, Jerome Baudry. Discovery of an Inhibitor of Z-Alpha1 Antitrypsin Polymerization. PLoS ONE 1. (May 2015); 10(5): e0126256

  • Jason B. Harris and Melanie L. Eldridge, Alice C. Layton, Fu-Min Menn, Gary S. Sayler, Jerome Baudry. A Computational Approach Predicting CYP450 Metabolism and Estrogenic activity of an Endocrine Disrupting Compound (PCB-30). Environmental Toxicology & Chemistry. (July 2014);33(7):1615–1623)

  • David D. Jenkins, Jason B. Harris, Elizabeth E. Howell, Robert J. Hinde, Jerome Baudry. STAAR: STatistical Analysis of Aromatic Rings. Journal of Comp. Chemistry. (March 2013);34(6):518-22

  • Michael C. Brothers, Anna E. Nesbitt, Michael J.Hallock, Sanjeewa G.Rupasinghe, Ming Tang, Jason Harris, Jerome Baudry, Mary A Schuler, and Chad M Rienstra. VITAL NMR: Using Chemical Shift Derived Secondary Structure Information for a Limited Set of Amino Acids to Assess Homology Model Accuracy.Journal of Biomolecular NMR. (January 2012);52(1): 41-56.

  • Vivek Philip, Jason Harris, Rachel Adams, Don Nguyen, Jeremy Spiers, Jerome Baudry, Elizabeth E. Howell, Robert J. Hinde. A Survey of Aspartate- Phenylalanine and Glutamate-Phenylalanine Interactions in the Protein Data Bank: Searching for Anion-pi Pairs. Biochemistry (April 2011): 50(14):2939-50.


  • ABSTRACT PUBLICATIONS

  • Jason B. Harris, Valerie Berthelier, Kasey Estenson, Jerome Baudry. Binding of a small molecule prevents polymerization of mutant alpha-1-antitrypsin and reveals a new binding site for drug discovery. Special Issue: The 27th Annual Symposium of The Protein Society, Protein Science 22, Suppli. S1(July 2013):1–258.

  • Jason B. Harris, David D. Jenkins, Jonathan Reyles, Stephanie Rickett, Jordan M. Utley,Elizabeth E. Howell, Jerome Baudry, R.J. Hinde. Determining Anion-Quadrupole Interactions Among Protein, DNA, & Ligand Molecules.BMC Bioinformatics 12, no. SuppliA5. 7(March 2011)

  • Rachel M. Adams, Jason B.Harris, Jeremy J. Jay, Beth G. Johnson, Miriam L. Land, Lauren J. Hauser. Developing measures for microbial genome assembly quality control, BMC Bioinformatics 11, no. Suppl 4 (March 2010): P14.